状況 
Windows 10 で RStudio から Microsoft Open R を使っているのだが
scales >= 1.0.0 なのに 0.5.0 が入ってるぞと言われてるんだけど、
available.packages を見ても
なぜか Cygwin の R だと
library("devtools")
install_github("larmarange/JLutils")
とするとDownloading GitHub repo larmarange/JLutils@master from URL https://api.github.com/repos/larmarange/JLutils/zipball/master Installing JLutils "C:/PROGRA~1/MIE74D~1/ROPEN~1/R-35~1.1/bin/x64/R" --no-site-file --no-environ --no-save --no-restore --quiet CMD INSTALL \ "C:/cygwin64/tmp/RtmpoV2dxq/devtools59a061971b65/larmarange-JLutils-1a31c14" --library="C:/Users/kou/HOME/R/win-library/3.5" \ --install-tests * installing *source* package 'JLutils' ... ** R ** byte-compile and prepare package for lazy loading Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : namespace 'scales' 0.5.0 is already loaded, but >= 1.0.0 is required ERROR: lazy loading failed for package 'JLutils' * removing 'C:/Users/kou/HOME/R/win-library/3.5/JLutils' In R CMD INSTALL Installation failed: Command failed (1)という結果に。
scales >= 1.0.0 なのに 0.5.0 が入ってるぞと言われてるんだけど、
install.packages("scales")
Installing package into ‘C:/Users/kou/HOME/R/win-library/3.5’ (as ‘lib’ is unspecified) Warning in install.packages : unable to access index for repository http://www.stats.ox.ac.uk/pub/RWin/bin/windows/contrib/3.5: cannot open URL 'http://www.stats.ox.ac.uk/pub/RWin/bin/windows/contrib/3.5/PACKAGES' trying URL 'https://mran.microsoft.com/snapshot/2018-08-01/bin/windows/contrib/3.5/scales_0.5.0.zip' Content type 'application/zip' length 791166 bytes (772 KB) downloaded 772 KB package ‘scales’ successfully unpacked and MD5 sums checked The downloaded binary packages are in C:\cygwin64\tmp\RtmpoV2dxq\downloaded_packagesという状況で埒が明かない。
available.packages を見ても
x = available.packages() %>% data.frame() x[x$Package=="scales",]
Package Version Priority Depends Imports LinkingTo
scales scales 0.5.0 <NA> R (>= 2.13) RColorBrewer, dichromat, plyr, munsell (>= 0.2), labeling,\nRcpp, R6, viridisLite Rcpp
Suggests Enhances License License_is_FOSS License_restricts_use OS_type Archs MD5sum
scales testthat (>= 0.8), bit64, covr, hms <NA> MIT + file LICENSE <NA> <NA> <NA> <NA> <NA>
NeedsCompilation File Repository
scales yes <NA> https://mran.microsoft.com/snapshot/2018-08-01/src/contrib
ってな感じ。なぜか Cygwin の R だと
x = available.packages() %>% data.frame() x[x$Package=="scales",]
Package Version Priority Depends
scales scales 1.1.0 <NA> R (>= 3.2)
Imports
scales farver (>= 2.0.0), labeling, munsell (>= 0.5), R6,\nRColorBrewer, viridisLite, lifecycle
LinkingTo Suggests
scales <NA> bit64, covr, dichromat, hms, testthat (>= 2.1.0), ggplot2
Enhances License License_is_FOSS License_restricts_use
scales <NA> MIT + file LICENSE <NA> <NA>
OS_type Archs MD5sum NeedsCompilation File
scales <NA> <NA> 875fcbd3bf93934e076c7c877b8c5f05 no <NA>
Repository
scales https://cran.ism.ac.jp/src/contrib
なので、ぐぬぬという。 解決方法
よく見てみると Microsoft Open R の repository が snapshot/2018-08-01 とかなってやがる。
どうもこれが原因らしい。
RStudio の「Tools」→「Global Options」から Option のダイアログを開いて、「General」の「Basic」にある「R version」を
- [Default] [64-bit] C:\Program Files\Microsoft\R Open\R-3.5.1
- [64-bit] C:\Program Files\R\R-3.5.2
x = data.frame(available.packages()) x[x$Package=="scales",]
Package Version Priority Depends Imports LinkingTo
scales scales 1.1.0 <NA> R (>= 3.2) farver (>= 2.0.0), labeling, munsell (>= 0.5), R6,\nRColorBrewer, viridisLite, lifecycle <NA>
Suggests Enhances License License_is_FOSS License_restricts_use OS_type
scales bit64, covr, dichromat, hms, testthat (>= 2.1.0), ggplot2 <NA> MIT + file LICENSE <NA> <NA> <NA>
Archs MD5sum NeedsCompilation File Repository
scales <NA> 875fcbd3bf93934e076c7c877b8c5f05 no <NA> https://cran.rstudio.com/src/contrib
となったのだが、
update.packages()
install.packages("devtools")
した後、
library("devtools")
> library("devtools")
要求されたパッケージ usethis をロード中です
Error: package or namespace load failed for ‘usethis’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
‘Rcpp’ という名前のパッケージはありません
Error: パッケージ ‘usethis’ をロードできませんでした
In addition: Warning messages:
1: パッケージ ‘devtools’ はバージョン 3.5.3 の R の下で造られました
2: パッケージ ‘usethis’ はバージョン 3.5.3 の R の下で造られました
とか訳の分からない状況に。埒が明かないので、
CRAN から最新版の GNU R 3.6.1 を拾って来て、RStudio は「Use your machine's default version of R」にしといたら、
- [Default] [64-bit] C:\Program Files\R\R-3.6.1
install_github("larmarange/JLutils")
Downloading GitHub repo larmarange/JLutils@master
√ checking for file 'C:\cygwin64\tmp\RtmpgNyT8d\remotes2550c691c96\larmarange-JLutils-1a31c14/DESCRIPTION' ...
- preparing 'JLutils':
√ checking DESCRIPTION meta-information ...
- checking for LF line-endings in source and make files and shell scripts
- checking for empty or unneeded directories
- building 'JLutils_1.16.0.tar.gz'
Installing package into ‘C:/Users/kou/HOME/R/win-library/3.6’
(as ‘lib’ is unspecified)
* installing *source* package 'JLutils' ...
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'JLutils'
finding HTML links ... 完了
A2Rplot html
JLutils-package html
auto_index_group_rows html
best.cutree html
cutree.order html
get_legend html
gg909090 html
ggchisq_res html
ggcross html
grapes-p-grapes html
Rd warning: C:/cygwin64/tmp/Rtmpm8RTk1/R.INSTALL3c18144f10c6/JLutils/man/grapes-p-grapes.Rd:15: file link 'paste0' in package 'base' does not exist and so has been treated as a topic
inv_cumsum html
leading_zeros html
long_to_periods html
multiplot html
number html
prop.ci html
pvalue html
round_preserve_sum html
s.freq html
seq_heatmap html
seq_makeRiver html
stat_fill_labels html
finding level-2 HTML links ... done
stat_stack_labels html
tidy.msSurv html
tidy.prevalence.msm html
tidy_chisq html
tidy_detailed html
tidy_model html
who_formatter html
** building package indices
** testing if installed package can be loaded from temporary location
*** arch - i386
*** arch - x64
** testing if installed package can be loaded from final location
*** arch - i386
*** arch - x64
** testing if installed package keeps a record of temporary installation path
* DONE (JLutils)
となった。Microsoft Open R の方は
options()$repos
CRAN CRANextra
"https://mran.microsoft.com/snapshot/2018-08-01" "http://www.stats.ox.ac.uk/pub/RWin"
ってな状況だったので、options(repos=c(CRAN="https://mran.microsoft.com/",CRANextra="http://www.stats.ox.ac.uk/pub/RWin")) options()$repos
CRAN CRANextra
"https://mran.microsoft.com/" "http://www.stats.ox.ac.uk/pub/RWin"
としてみたところupdate.packages()
Warning: package 'boot' in library 'C:/Program Files/Microsoft/R Open/R-3.5.1/library' will not be updated Warning: package 'class' in library 'C:/Program Files/Microsoft/R Open/R-3.5.1/library' will not be updated Warning: package 'cluster' in library 'C:/Program Files/Microsoft/R Open/R-3.5.1/library' will not be updated Warning: package 'codetools' in library 'C:/Program Files/Microsoft/R Open/R-3.5.1/library' will not be updated Warning: package 'curl' in library 'C:/Program Files/Microsoft/R Open/R-3.5.1/library' will not be updated Warning: package 'foreign' in library 'C:/Program Files/Microsoft/R Open/R-3.5.1/library' will not be updated Warning: package 'jsonlite' in library 'C:/Program Files/Microsoft/R Open/R-3.5.1/library' will not be updated Warning: package 'KernSmooth' in library 'C:/Program Files/Microsoft/R Open/R-3.5.1/library' will not be updated Warning: package 'MASS' in library 'C:/Program Files/Microsoft/R Open/R-3.5.1/library' will not be updated Warning: package 'Matrix' in library 'C:/Program Files/Microsoft/R Open/R-3.5.1/library' will not be updated Warning: package 'mgcv' in library 'C:/Program Files/Microsoft/R Open/R-3.5.1/library' will not be updated Warning: package 'nlme' in library 'C:/Program Files/Microsoft/R Open/R-3.5.1/library' will not be updated Warning: package 'R6' in library 'C:/Program Files/Microsoft/R Open/R-3.5.1/library' will not be updated Warning: package 'rpart' in library 'C:/Program Files/Microsoft/R Open/R-3.5.1/library' will not be updated Warning: package 'RUnit' in library 'C:/Program Files/Microsoft/R Open/R-3.5.1/library' will not be updated Warning: package 'survival' in library 'C:/Program Files/Microsoft/R Open/R-3.5.1/library' will not be updated nlme : Version 3.1-137 installed in C:/Users/kou/HOME/R/win-library/3.5 Version 3.1-142 available at https://mran.microsoft.com checkpoint : Version 0.4.4 installed in C:/Program Files/Microsoft/R Open/R-3.5.1/library Version 0.4.7 available at https://mran.microsoft.com doParallel : Version 1.0.13 installed in C:/Program Files/Microsoft/R Open/R-3.5.1/library Version 1.0.15 available at https://mran.microsoft.com iterators : Version 1.0.10 installed in C:/Program Files/Microsoft/R Open/R-3.5.1/library Version 1.0.12 available at https://mran.microsoft.com lattice : Version 0.20-35 installed in C:/Program Files/Microsoft/R Open/R-3.5.1/library Version 0.20-38 available at https://mran.microsoft.com RODBC : Version 1.3-15 installed in C:/Program Files/Microsoft/R Open/R-3.5.1/library Version 1.3-16 available at https://mran.microsoft.com Error in readRDS(dest) : unknown input formatみたいな感じでにっちもさっちも行かなくなってしまった。
とりあえず GNU R の方が動いているようなので良しとしよう。
参考
- Sho Kuroda's Website / R入門
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